Scaffold Ga0256747_1327587

Overview

Basic Information

• Taxon OID: 3300023444
• Scaffold ID: Ga0256747_1327587
• Source Dataset Name: Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 675-SC9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Delaware
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 695
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Source Dataset Sampling Location

• Location Name: USA: Loihi Seamount, Hawaii
• Coordinates
  • Lat. (^o): 18.906379
  • Long. (^o): -155.256927
  • Depth (m): 1299.98

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008338	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256747_13275872	F008338	N/A	ELKRWRQSRGRKPLRERPSDRRTVRVNGQEVLVVRKAKKPTRTDPSDLPSE