Scaffold Ga0209414_1002699

Overview

Basic Information

• Taxon OID: 3300023301
• Scaffold ID: Ga0209414_1002699
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7962
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F037978	Metagenome	167	N
F038569	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209414_10026991	F037978	N/A	VLNASYYLFDLDHLDATGQVFIVIRDGKPTLAYRRFYGDRWSPEIMPNTPE
Ga0209414_10026994	F038569	GGAGG	VKSIKIYTWTRHPKRWSPRKSQHRQSIPKWPMKPNGPGLSSAPNSKGKAVNFADVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQTIQPGFRNGGESLADVAAKVDLISAKLGL
Ga0209414_10026997	F006056	N/A	MTLQITLAGSVIDLDLFEYNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLDVSFISTTNPTAITTITAMGNLAKLGYTDVGATGYVEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTALDALARIAQGTGATYYDDPQGRIIFEDYGNRGSTTFPGIWANQTGTWSEAEGTWADYPLSPASFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASIIQYGRREYRLETDIKTISDATERAAGIMTAQANGLWNLGQISVLVDQLNPADTDKLLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSQVGPGAQWFEIITQSDLVRL