Scaffold Ga0256703_10928876

Overview

Basic Information

• Taxon OID: 3300023291
• Scaffold ID: Ga0256703_10928876
• Source Dataset Name: Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada. Combined Assembly of Gp0242115, Gp0242119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 661
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: University of Toronto, Toronto, Ontario, Canada
• Coordinates
  • Lat. (^o): 43.6629
  • Long. (^o): -79.3957

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092835	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256703_109288761	F092835	GGAG	MNPGVRLRVGHQHWQFWPILAHFMDYYSLFWGPGVISMIDEPLGAFTCRSSTLAGFVDSVPFHGLLFTVLGTQRDFHFC
Ga0256703_109288762	F092835	N/A	VWSSTIAFWRILAHFMDYYSPFWGPEAISIVIEPEGALMCRSSTLEVLADSGLFHVLLLTVLGFRSDFHD