NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255763_1023045

Scaffold Ga0255763_1023045


Overview

Basic Information
Taxon OID3300023273 Open in IMG/M
Scaffold IDGa0255763_1023045 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3616
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038654Metagenome / Metatranscriptome165N
F046347Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0255763_10230451F046347AGGMGDHTRANTFSEAVQQIVNHAEQFDISIKTSKDVEKFKGLEGVGRSTLELFKEFVTTGEMKRLRDLKGED
Ga0255763_10230455F038654N/AKRKRKILIEPWVRLCQKLYKVITRMTLIIAVLLLFLIIYYDRTRSLYIIHGSPIRVPEAPFSVTKPPNFANVKEPIGELTSMMLKNNVQVE

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