Scaffold Ga0247772_1000018

Overview

Basic Information

• Taxon OID: 3300023264
• Scaffold ID: Ga0247772_1000018
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159411
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 101 (70.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044823	Metagenome / Metatranscriptome	154	Y
F098300	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247772_1000018109	F044823	GGAGG	MNRWVIVIAVTASSLGFGCQDEVRCEKERMDLNKAWSELRAAATHHKLEGTDVSTWAVIENKAELLESSFMTRQVTWNSAKKASDTIASKLPTLESSEGVKLAGFRNSAETAIKQQSSFEKECR
Ga0247772_1000018143	F098300	GAGG	MLIESTEQFQASTGIAIQRGENEVAESDFESLPLATRTKLRILQEHGVLRVRASEAEKPAPSAEQNK