Scaffold Ga0224551_1000118

Overview

Basic Information

• Taxon OID: 3300023259
• Scaffold ID: Ga0224551_1000118
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9786
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0472
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000828	Metagenome / Metatranscriptome	872	Y
F004586	Metagenome / Metatranscriptome	432	Y
F004589	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224551_100011812	F000828	GGAG	MSIFDEQYRVVAIEGDRLVIRGILSGAVLTIVNPEPDTPLTPEDYPPGKLIALTDPSVGPTNNSN
Ga0224551_100011813	F004589	GAGG	MRKHYLHLSAYSCDQCAGPVVTGSIAVRENEISKETDIRAVGAICLTCGHRQSKATEPGITRNFPPSLWDPSKSIKAIRSTTA
Ga0224551_100011816	F004586	AGGAG	MTTTNEQTKCAHLPCRCVVQPGDKYCGPACKDAGAAEVEIACQCDHGSCPLTV
Ga0224551_100011819	F000042	GGA	MKNIKFVVKVNRGGAHAPQYVLRIDRLPIQTTTDRKLALVMGRFTAEDAVKSMQNSHCNPELVSVRVSA