NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224535_1041504

Scaffold Ga0224535_1041504


Overview

Basic Information
Taxon OID3300023258 Open in IMG/M
Scaffold IDGa0224535_1041504 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046150Metagenome151N
F059592Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0224535_10415041F059592AGGGGGVPKRQLASRSVNVEFLTGLELVSTKIFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGDEVVYYEHIATVRHKATNKFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVSIMRSHEDWLAHIADVGTFDTLA
Ga0224535_10415042F046150N/AQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAIARRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATSGEEETHEEEQASEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGGQ
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