NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224535_1005653

Scaffold Ga0224535_1005653


Overview

Basic Information
Taxon OID3300023258 Open in IMG/M
Scaffold IDGa0224535_1005653 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3185
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003287Metagenome495Y
F081635Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0224535_10056531F081635AGGMPQTNDDLYSVFLADLSEKERDRVRRYADRFGIEPTDAVWALMIVLGWYGDLYEAVPQKINVTVQ
Ga0224535_10056533F003287AGGAGGMEKQRRNPQMLSAKQFEALRTRLDERGDVPPPQPESYMMGEIVRGVYPQLKKLRENGYTLKMLVRIFEEDGVVITTNALSTYMKNLGLPREQTSVKAASKGTVGSPTVEVRRGQFQMKPDVTL

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