Scaffold Ga0224529_1005088

Overview

Basic Information

• Taxon OID: 3300023247
• Scaffold ID: Ga0224529_1005088
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4480
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium RBG_13_36_22 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041546	Metagenome	159	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224529_10050881	F102366	N/A	MVLTHLRMPTSDVARFEVTFTGNSDCFVARIDFPAHYGGGYQIFEGILGYKVSPSSSVMGKNRVTPRFPLRSTIPPQTAEDLREEERQLRMRLDYGETFNNDRVS
Ga0224529_100508810	F041546	GAGG	VSRSYTLSATHYAAGWVVPDDDNFNVRTEVNDLAIRYAKLPDGPDKEAAFLKLVECFHGYLIKYTNMVIRGQLPNPTSRVGKDAAEMLKKLLPRGSNPDQAVLSKTCHTLHLAFKTMTTDDIYDAMVMCFLRACRRYDPLYTDKVRQVCEVLDEKTFCQQFTADTVSSVVGFDAVGCIRLLVRKQYLVSVVGNQRKVIGYRRGPAWPPQQAFFE