Scaffold Ga0222708_1004897

Overview

Basic Information

• Taxon OID: 3300023242
• Scaffold ID: Ga0222708_1004897
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1576
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Roseicitreum → Roseicitreum antarcticum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000656	Metagenome	956	Y
F018128	Metagenome	236	Y
F073114	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222708_10048971	F073114	N/A	NAVRDLLESEDIKMPAGQFLARQLEQIGYRHSTRCITSLFEGHAFPKAPKQSRLYYVEDRTGTDPAGIMALYDAAQRLGDGGPKRSTVIDFPGL
Ga0222708_10048974	F000656	GGAGG	MQMPRNGFDSLAAVARLNTDNTSRHRERWPTLAWVWDELDELRRWQDEAIYADDHAALDEMDALTEQRDALSEAVRLLLEPEPDMERVQAVLR
Ga0222708_10048975	F018128	AGG	MTDKAEQAIRTRAMWSAVVLTAINDAIRHTARESEKHKGRALNTLTLWANSRDGRKVISLSGINPDKRVTDAMVAFAVKGVPTTMQRKRETNL