Scaffold Ga0222650_1040921

Overview

Basic Information

• Taxon OID: 3300023237
• Scaffold ID: Ga0222650_1040921
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #367
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 822
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028965	Metagenome / Metatranscriptome	190	Y
F066527	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222650_10409211	F028965	N/A	FFEQRDYVCVSAVRRPVNAEQRGLFFGKDIGMQHQQIKKYMDRLFVPREVHLATDYGAMKQADNTFGQLFD
Ga0222650_10409212	F066527	GAGG	MTQRFYHEDLLDEFGDDLDRIFGPIEARTKGLTSLAGQPDGDLKAILKGLKTKVIDCAAFMPKRQPFLNVVKEVLRVMRDSVDPETGKSIFDGYNLPYFIEEDRVQGAEEFAWNTVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRRQSDGTLDVNDSQHATCSRALVGARVCPAT