NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222659_1029482

Scaffold Ga0222659_1029482


Overview

Basic Information
Taxon OID3300023236 Open in IMG/M
Scaffold IDGa0222659_1029482 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #547
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)802
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044313Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0222659_10294821F044313N/AMPSTPSNDLNTSAKWDGSNETHDGYKAWVNDVSLWANHNQMAWIMKIAKRLQEAPNFRRPVSRAPREQFFDEAQAAREELIAEIQRSTETDAGEDPADDEQADDVTFGHKMMYPAAPDWNVTSDDFADEDLASLLRGDGKKKIDLVASMHMLKLQCLTAKLGKTAWNDLSSMHV

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