NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222661_1010842

Scaffold Ga0222661_1010842


Overview

Basic Information
Taxon OID3300023229 Open in IMG/M
Scaffold IDGa0222661_1010842 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #551
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1602
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032551Metagenome179Y
F102633Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222661_10108422F102633N/AMVDTERETREKIDNINIEMLNTITKYEEKIADLKQKQIDIIQFINDKINIICIDNDDLDEIKQSLMELSDALEDV
Ga0222661_10108424F032551N/AMTYTNSLKLSTIEYLDLLDDIPYKYIKKMIHEDDDDYYDVEIMDLESERVAYCRTQFKISLKIDISQGSSPIYVDKTFIIIKEYNNSSGIALTMLDLYEEDSDDE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.