Scaffold Ga0255814_10239753

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255814_10239753

Scaffold Ga0255814_10239753

Overview

Basic Information
Taxon OID	3300023205 Open in IMG/M
Scaffold ID	Ga0255814_10239753 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0242100, Gp0242119
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	867
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Durham, Ontario, Canada
Coordinates	Lat. (^o)	43.6629	Long. (^o)	-79.3957	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032187	Metagenome / Metatranscriptome	180	Y
F073390	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255814_102397531	F032187	N/A	LFAVCNSNIAVSSPPLEPAEASPGPHPKGDDEIRKMAEAIMDKVVDQLLNKAAEIVLKED
Ga0255814_102397532	F073390	AGG	MXNLAQSETALSSEDIKDPSAEASLVGGNIFTDIWDNGGREMAQEIIQRSEKGIHDARKIAEAAEKGAEPEGQIGIN

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