NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10261480

Scaffold Ga0214919_10261480


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10261480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009750Metagenome313Y
F010398Metagenome304Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_102614802F043399N/AMFYDDFPIVIWTIVKKNSNYILLDSCGIEVFRRKENRKQEIYQYCENNGIDYQEEF
Ga0214919_102614803F010398AGGAGMEISIQGIAKVNYELVIDEDVFNDACEECGLDPANFKKFTKDEWDILNPHLVQAVVDNEPDIDYTEIHVSSSVFADTLTIDDRNHMTTVYYDKNRKTDSVEVM
Ga0214919_102614804F009750GAGMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVNIPRNLGDDIWLKFKTEFEGNYSYNSF

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