NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10250938

Scaffold Ga0214919_10250938


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10250938 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038553Metagenome / Metatranscriptome165Y
F064662Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_102509381F038553N/ATNLVSNTGVISSDVTGVGTGRQTPAAASYGTNKAIFGYGYVQIQPFYTSKTNLVSSIGVMATDTTGVGTARNRLAAAGYGTDKAIFGYGNVGELTSVTNLVSNTGVAASDVTGVGTARANLAASSYGTDKAIFGYGLIGLQSSRTNLVSNTGVVALDTTGVGTARWSLAAAGYGTDKAIFGYGYNDFDINLTNLVSNTGVVSGDVTGVGTSRSNLAAASIGG
Ga0214919_102509382F064662AGGAGGMPSKLNSEFNYRTQVIGETPWEKIKTLLGFLEGRNRAKALEEVGAKKFAAKKAKLEYLRKTTNLEHEILELEAEIIETESVQESVRQAYILNLEEIEILKKLLAELYEIAEPTRLEGYTDEMMFEINAPNEFTLWVAKEIHAEILAQGRPSPAKLRNAMSCPEAWAALQEIGLVPKDTPILYSNDPMNIKLIAKVKSE
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