Scaffold Ga0214919_10244124

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10244124
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F014847	Metagenome / Metatranscriptome	259	Y
F028145	Metagenome / Metatranscriptome	192	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_102441243	F014847	AGG	MEFESNEQLLGDLMEQLHTLHKENARLLQKIEALEKHNEELNRKLKSIQALFL
Ga0214919_102441244	F028145	N/A	MKIFLAFFINLVISLGTSYILYKFFKKDVSPTIISIALIVVYMFLPQKFHDWVSNKDE
Ga0214919_102441245	F045700	N/A	MNKIRPSQCFECETGTYKDVTVNYFSQLSEGRSCVTRDVTIQRCDTCGSEILDSKSSKIIESNIERNFPGYYERTRSRRN
Ga0214919_102441246	F000962	AGG	MNAHVPEEIKSKYPHMEFRGKPRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT