NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10118426

Scaffold Ga0214919_10118426


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10118426 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2195
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N
F041194Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101184261F041194N/AMNDLQITCNYCDTQAKIKRDKIYMQCHCDDDRRIIDVREYLLEDKHHDYLYSMFSDNFMYNESKA
Ga0214919_101184265F016528GAGMINNNELFAKVLAENPLPYNFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPHGLTNYYTDVETVYGKVD
Ga0214919_101184266F014847AGGMEFESNVDILKDLMDQLHTLHKENARLMQKIEDLEKHNEELNRKLKSIQALFL

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