Scaffold Ga0214919_10102671

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10102671
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2429
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F010398	Metagenome	304	Y
F048994	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_101026711	F048994	N/A	MIGTLKLEFGLMNLYVNDVCIVSTNTMVGIRHAMKRYNLQGYTMIAAE
Ga0214919_101026714	F007310	N/A	MRAVYWNNTERWFNHHHYELLIEDITGFDLKQNLCEESVKYMAKRLKDTPYHRTFKSKYSIYSDEYNALVEKFNDQANNNGKIEVA
Ga0214919_101026718	F010398	N/A	QYLIYYSCKELEMEISIQGITKVNYELVIDEDVFNDACEECGLDPANYKKFTKDEWDVLNPHLVQAVIDNESEIDYTEIHVESSVFADTLTIDDSDNLTTVYYDKNRKTDSVEIQ