Scaffold Ga0214919_10091622

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10091622
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2633
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100916222	F017132	N/A	MIRKLETAKVGEDLYEIVKKIPISKFITEPTGEKADTLKQYYGVEKILKFHQTQEYLFVNLIPELEIL
Ga0214919_100916225	F006935	N/A	MEKRYAKEIINWAEEAKETLTVRKEIIMDDDTTDEQLGMIIRMMYRAKVETQNETILKTKQNSGL
Ga0214919_100916227	F040624	AGGA	MKSEKVMALYKRKKELQEQIVYWEKYQGVNWLGKWGRSVKLEVLKEKFAKIEAKIAKLKN
Ga0214919_100916228	F047676	N/A	MEIIITLIALIIIWCVAFMVGAKQGANRTINQIKKDGGYYDLEYTSSAYPILYPTSSVNNDTMGSIGSKPKTQADYQMEHKAEGETPAIDFMHNWIQEKSGKKPVSQKRKPKTTKEWEDEFDLGGHE