Scaffold Ga0214919_10070205

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214919_10070205

Scaffold Ga0214919_10070205

Overview

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10070205 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3168
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025685	Metagenome	200	Y
F057986	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100702058	F057986	GGAG	MIGMMKRVLATPTPLEMAAKELVDAQRAKLEAESALDYAANMVNYNNDRIDRLRHRLTELQGEKA
Ga0214919_100702059	F025685	AGGAG	MKYIADFFALVGLCATIIMVTFYIGYITYQPKCHTVGALFSETCK

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