NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10042373

Scaffold Ga0214919_10042373


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10042373 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4492
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004761Metagenome / Metatranscriptome424Y
F032258Metagenome / Metatranscriptome180Y
F082347Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100423732F004761AGGMTITLTTLRSQVRDMSDLDETDLSDAVIDQFAREGFQRIYALERRWPILQETYTFNTVANQREYSISAIGDIREIISVVDTSAQGARLHLIDYNQAEMVWLGNLDVAARPYFYSFWNKKLQLWAKPNIVYPMTIRAFRNPVYTWLTDITEAIDLDEWFHAILPYFVLARVYQRQEDSDLSNMYMKSFEEGVSFARRDLMKASSSQPVVMSGGRQYPTLQRWLQTLGRTLKNY
Ga0214919_100423733F032258N/AMNQSAKLAYTLYGEPTTKHSRLAHAEGARLAAPSGPYIGRNRCIENNDTCEGPKARGTDFCIGHLRNKGQA
Ga0214919_100423738F082347N/AYMEPYEKQYKLLDQRLQAFEKTKALDDLERTVSSLQTRYGSDFDANEVVSRALAMGSSDLEAVYKQIAFDRIYEDASAVRQIRDKKAEEQTKTIQAKRQASVVSGSAKAVSADVSAKPITSLREAFEAAKRQHA

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