NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10041620

Scaffold Ga0214919_10041620


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10041620 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4547
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F004696Metagenome427Y
F008359Metagenome / Metatranscriptome334Y
F025025Metagenome203Y
F032282Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100416201F032282N/AMYNSSIVDIDIEKYNSIEKEREKIMSDEKFIAWLNEYKIGSRIEVKDFRAMELNRQYADNYPKWVQRMFN
Ga0214919_1004162010F003691N/AMNSRMTNEFNQFTEVSYNTSRNERPIYKNFSASKMSNSVKPQSIVEFTDFMGRTHKVAVRNNTELKKQMKFFAELKKESATIKQIIGQYPIKLGKVEKRFIADCKRELKSVLKLSNKQIQIVLG
Ga0214919_100416202F004696N/AMDYAIKKLKQDEIVLMKKIKSLQDGKPKWAASEQLDEIRSAIHLLERYNDITEQDIENEDEYLKQVFELNPARAKA
Ga0214919_100416205F025025N/AMSKKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDRPRIFVDEESVRKYVGELDTETKMAKLENNLIKNVLTKKEKKEALATSVLEGALVSDKLVLDTAYSTYYNGGSLNVESTTANGEDTDK
Ga0214919_100416208F008359N/AMSKSKLNVKSKYSIKKVKRVMRMKSEDFVPTTFEVYKVSGPNKFKKYFVSRKDAKSFIDKYTDTKMTLGIVRNIMNEIKYK
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Institute for Fundamental Biomedical Research
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