NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10035372

Scaffold Ga0214919_10035372


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10035372 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5087
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010619Metagenome / Metatranscriptome301Y
F014135Metagenome / Metatranscriptome265Y
F019602Metagenome / Metatranscriptome228N
F043225Metagenome / Metatranscriptome156Y
F100405Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100353721F010619GGAGMEEPIDFENSHPNLEKIIESEGLLPITKSVAKMLMRNPYTSLGKFFKKLSDENLQSLMEIIDEGDSEFNEGMEDIVLMTEMLSRAEGVPSQSIDDITENVNYFGACVTCVSLARKGLVHVYYDNMSFGRDQGDKVLVEKID
Ga0214919_1003537210F014135GGAGMSKGLEIDYETADRITLAVMQDQLKFLRKDIEDYKEGKWLHPEDVTNHIKVIAALELLIPYYGGTV
Ga0214919_100353725F019602GGAMDDRDLIERYILEAWDLGLTGTDVVTYVQYMSSVPVFEIEPVLQNLIARMAE
Ga0214919_100353726F100405AGGAMTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVPTRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKPVKAPVVKAAKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT
Ga0214919_100353728F043225AGGAMNLDLINAELQDVAFTQQQEEINLTYQDFLDTMNAYHDMMMCASHSYDEDAIFYGVN
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