Scaffold Ga0214919_10028445

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10028445
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5916
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012978	Metagenome / Metatranscriptome	275	Y
F013085	Metagenome	274	Y
F016809	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100284452	F016809	N/A	MSKTNEEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEIENYKQTKQNGNT
Ga0214919_100284453	F013085	N/A	MEILSEIIEISDEMVNSLEEDGFFEEHQFIDRIPLKRALQIAMQRKWEQEDDMLLTDKEFLEVCKSVSNKSIGKTIEDLVDKGALDMSINEDGEILYSANKDFQFDKDDDDEFQQD
Ga0214919_100284454	F012978	N/A	MNFNKTDEELKVMSEDELFEYLDAKALHLKQHTSPLSSYKTKKFASIGAAISNTEFDYDSVKQIAKENEQKGYEKFIKDKNKNNE