Scaffold Ga0214919_10024721

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10024721
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6511
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F049625	Metagenome	146	Y
F073554	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002472110	F049625	AGG	MLSDIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDSNGSPVHMKAWVKVNPFKRKDNE
Ga0214919_1002472113	F073554	AGGA	MSIEMFDDDDVDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHNGYVVAKENEDPLAW
Ga0214919_1002472114	F045754	N/A	MNIDPNKPWPFPSNLVHGDNDAKLIADCLALLQDFTAFQLRGEIYYGYLDTKALKVIEELRGATDEAEPST
Ga0214919_100247219	F026266	AGGA	MTIDTITFHFVGALEDSFAIVDVQCQIDEDGDCRDLDSVMYQGLDLLQVISHSQWEHLEWQGSKKYKAENYEQLTIDHDNNSTLEAVYGLSKPSFNIR