Scaffold Ga0214919_10015586

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10015586
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8946
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F012113	Metagenome / Metatranscriptome	283	Y
F019102	Metagenome	231	Y
F026543	Metagenome	197	N
F035669	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001558611	F019102	N/A	MSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKSRKEAIKLAWNRDLFREKIMDFIDGKTEADRDIATQIVSSILDEAQKGRVDVIPAPHQPDLGNA
Ga0214919_1001558612	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVAIRVVQTKGGQTLLISENATSEQRRAILKHL
Ga0214919_1001558613	F006138	GAGG	MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAVGYYNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0214919_100155863	F012113	N/A	MGKRTLDTLSISMNQLLSFVQTQDLFAWLGALTALLTAAIAICALIPGDEPEATLTKIVSFLSKFSRK
Ga0214919_100155866	F035669	N/A	MREQQITELQGTSILTKSFFNKLIRRIECTKPLAGSGITILEKENGFEISGGGTISGGKSIYGYSEIALNVCSNGTAVTIIVLGKV