Scaffold Ga0214919_10013348

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10013348
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9962
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005027	Metagenome / Metatranscriptome	414	Y
F034929	Metagenome	173	N
F071244	Metagenome	122	Y
F084244	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100133481	F084244	N/A	MTVDVGMEFSGLKDALAELNKIDKSLRRQITKDFKAIVQPVVGRAESMLPGGAPLSGMARSWKGKSGSDIMSWNDARVKKNIKAFTSGKKVREAPSGFKQNLAVFGIKWAGPQATIFDMAAKGIMGENLVAKFGPPSRVIYKAYESASADVERQVAELVNRVMELTGNHGRI
Ga0214919_1001334814	F005027	AGG	METSTGELIAKLTNISMNLALELRFKEASVIMEAVGALTALPNIAETIRDSWHPSLNTSGPSKGLSYLSSVKLADDDE
Ga0214919_1001334816	F034929	GGA	MLPTWGYIALRSKDKKTMVQVFTDLTTGLIVYTQVCQRAESWHSWGPPTEVERVD
Ga0214919_100133484	F071244	AGG	MAYTIIAENVGTPGEEYIPVEGINIEALLDGGFIKSDKRPTKSAKTVETSEE