Basic Information | |
---|---|
Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10009691 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 12380 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (36.36%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005024 | Metagenome / Metatranscriptome | 414 | Y |
F006107 | Metagenome / Metatranscriptome | 381 | N |
F009398 | Metagenome / Metatranscriptome | 318 | N |
F032255 | Metagenome / Metatranscriptome | 180 | N |
F078377 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214919_1000969110 | F006107 | GGA | MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAMLTTVQVLDNLILPLFDDAGASALNAPSNDASGPFTGQFAAPLDFGASSISNRSRTFTRTFTLYCSATI |
Ga0214919_1000969111 | F032255 | N/A | MFDTDNATAVFTALASIESYDLTHEADTEEVRNSGGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTGAAVALNV |
Ga0214919_1000969119 | F078377 | N/A | MSNIITVQLPTETSYWGSTATEADVYRIIGNLETMIRSQFPDVDFDFQHMQEPRGRGIFGDDQSLMDSIYQFIQDNWTAAL |
Ga0214919_100096918 | F009398 | N/A | MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRIPVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK |
Ga0214919_100096919 | F005024 | GAGG | MTVDSSNFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALVSLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMINHMTEALLANGKVLEDNGISIK |
⦗Top⦘ |