Scaffold Ga0214919_10009691

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10009691
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12380
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F032255	Metagenome / Metatranscriptome	180	N
F078377	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000969110	F006107	GGA	MNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAMLTTVQVLDNLILPLFDDAGASALNAPSNDASGPFTGQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0214919_1000969111	F032255	N/A	MFDTDNATAVFTALASIESYDLTHEADTEEVRNSGGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTGAAVALNV
Ga0214919_1000969119	F078377	N/A	MSNIITVQLPTETSYWGSTATEADVYRIIGNLETMIRSQFPDVDFDFQHMQEPRGRGIFGDDQSLMDSIYQFIQDNWTAAL
Ga0214919_100096918	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRIPVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0214919_100096919	F005024	GAGG	MTVDSSNFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALVSLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMINHMTEALLANGKVLEDNGISIK