NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10009691

Scaffold Ga0214919_10009691


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10009691 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12380
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F006107Metagenome / Metatranscriptome381N
F009398Metagenome / Metatranscriptome318N
F032255Metagenome / Metatranscriptome180N
F078377Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000969110F006107GGAMNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAMLTTVQVLDNLILPLFDDAGASALNAPSNDASGPFTGQFAAPLDFGASSISNRSRTFTRTFTLYCSATI
Ga0214919_1000969111F032255N/AMFDTDNATAVFTALASIESYDLTHEADTEEVRNSGGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVSITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTGAAVALNV
Ga0214919_1000969119F078377N/AMSNIITVQLPTETSYWGSTATEADVYRIIGNLETMIRSQFPDVDFDFQHMQEPRGRGIFGDDQSLMDSIYQFIQDNWTAAL
Ga0214919_100096918F009398N/AMTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRIPVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0214919_100096919F005024GAGGMTVDSSNFDAAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALVSLANQYGLNEENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMINHMTEALLANGKVLEDNGISIK

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