Scaffold Ga0214919_10004961

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10004961
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19135
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011669	Metagenome	288	Y
F039482	Metagenome	163	Y
F054585	Metagenome	139	N
F068756	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000496119	F068756	AGGAG	MTGFGKAPIKREGDIADPDEFAWECNCEKCQAKYAEWKEAFDAQQKQYEEKNT
Ga0214919_1000496123	F011669	AGGGGG	MNDNEDYELANWMHLIATCILGLFALVGVAGVAGFIWGMT
Ga0214919_1000496124	F039482	AGG	MSDRMELTEHTVFILNGIKLLPHYTLPCYVTPGFTKQTPMKLWTVQELKDAGAVESSAFLWPRHTLAAGGWHE
Ga0214919_1000496125	F054585	GAGG	MNWLAAALIALVLGTSHYLDWPSEFEAAQDAAAAYRAARTEQERQQRFEAAVQAMCGENAGWKMLADGSVQCFTHRGFKTRKVTL