Scaffold Ga0214919_10004489

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10004489
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20391
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F027490	Metagenome / Metatranscriptome	194	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000448911	F000857	GGAG	MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFSTPNMNYKVGAIDGERYVQYEQKNVESVKEYCKERREFYKMIGTTDNPIFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0214919_1000448915	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPVTQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKVDVDLQGAMQEAMAPDESEMMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMSRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAGTCLKGQEFLDAKSVENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKTQESGSVTALNMKKAEDIEMDNYFEGLAAKRGKLSAVQID
Ga0214919_1000448917	F006264	N/A	MEDPSNIFQNKLSSQAEVCARKTLEWLQKDLQGTHKLEPDEVYYLAYAAQILLDIRDSYGKK
Ga0214919_1000448918	F001059	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGVVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVEKKDVIPEDPLRKMPKRSIDLPDEESQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIPVGEKLNKYGQTVPEKYSWIDPRTEERVLRNPDGTFSKDGRGVHTFLVGEKGGGVWNMIDKDIVSISAKNIADPWA
Ga0214919_100044892	F012214	GGA	MSDYSRLRTPFTSMSFTPDVPSNALGPNEYNSGKNIEADVRCIKKIFGEIAIASTITDMPIFMEGGFRSETSWVYIVATRNSSSQGKWWMITATGISNITPGVGANPSVYISGYTEDVNITTSWVGNVFFINDTVQNPMYFLPTSNEITVYSDAAWNYDVGVTSTRAGFVRNFCSPNVGNILISGNLTKVIGGTSYNYPTTVRWSQAFANQGYPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNPTYAGRMFMVNNTQKYQIEIYYPDLTSSGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYFNLASRAVVYARGGVSSSRLIETSIGNSFVGSAIDSQFERNNIALQTANGPVPYSSKVYIHRLLPEIAGTGAINITVGGANSTAQATTYGETGITNIDTDTPWVPTQQNTFRTVAVKFGSYDATDTWKMSALNMQATVTEDAF
Ga0214919_1000448920	F027490	GAG	MSYGTVINGGAQMRKGVTKGINDKLSTRSAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA
Ga0214919_1000448923	F098944	AGG	MFDEIRPEGSTVTSEEIKKRAREYAKARRAQNKAMKLATGQIEPKKAPVVDEFDMSTFVPRSQKQAGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV
Ga0214919_1000448924	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDKAVFRKNVTVATTVQLFDKSKEFIAVCRGPKVIDTFLGQAEVNDALLGYCWFDRGGYTTYANEEISNAKFHHVDLELSPRLRVRLINEMIDQHILWANQWYIPVVCSTSIRAEHDGFMKIHKKRGFQVNGSYAWLRTEKGMECLTK