Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10003971 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21880 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (84.21%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011374 | Metagenome / Metatranscriptome | 291 | Y |
F027447 | Metagenome | 194 | Y |
F064409 | Metagenome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214919_100039711 | F027447 | N/A | IQSIHGRFNRLGRGHRGHILMWKILEIQADGDLITGARYFCAKNGVETEGWWKFAEPKLIVPFADVTEDIVIGWVTADIGAQVEARLDEQAAATQRVVVAPWLPQVFTPSI |
Ga0214919_1000397120 | F011374 | AGG | VDPITAFALCKGAYEGIKGCISVYQDLKKTGNDLSKITNEVGGALSSFFKGHAELEASHEKAQAQREEGVKDDLATQAIDNVMYLRQTKQFYADLERMVRWEMGMPDLWHDIVEEYQRLLDQKSEQAARELHEKRVKAWRRQRLKNQIADRALETVLVLFVAAYLICLMWIISLHHRGRLATFLS |
Ga0214919_1000397131 | F064409 | GGA | MKLFKLNGISKKYALRAAHYRRVARSQNVSGLDFSEKALRDLFDWESRGEGRVDKSRNGFAYGKWCVDLSVSMWVEGIISGDFCKAEFLQTRLQKLHNQSKLEKIVVTQAFFPYVKGLK |
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