Scaffold Ga0214919_10001977

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001977
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32827
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (68.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F027747	Metagenome / Metatranscriptome	193	N
F030080	Metagenome / Metatranscriptome	186	N
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000197725	F030080	AGGA	MYIDGMGPRQSMAVEILDTVRFGGLDKIKGANGYAKKKLDNGDAYVIPFGLSKNIFGAVVISAPKRLYITYRLNSKEKTVRMTNAWEVKRFLVKQFIQNM
Ga0214919_1000197731	F067732	AGGA	MKIETAIGILNKEREFLGIGFLELLQDIQKEGKMIYSERVMEAFERFMVDGRKMFA
Ga0214919_1000197732	F027747	N/A	MVLNMITYKFYVGKDVYEFEAESALNAMEQCNRQVIDKLDLHPMAWFDAGQNAFSCQSGNFFD
Ga0214919_1000197760	F020540	N/A	MSKIQQFGRPHETFDPNNKTHRKIFHDVLRYRTWGRSPICFWNEEDSSGSNSLMDQCIKAMGRYYIEKEFGELIDDEPHIGKDQIRSRPNPHVYRYTRKKTLT
Ga0214919_1000197761	F021534	AGG	MKTETENEVIHFLEELLHPEGFGWSVTPEVRKESKRLLIMIESEINEQDSTVRQTA