Scaffold Ga0214919_10001442

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001442
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38915
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (84.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025611	Metagenome	201	Y
F034180	Metagenome / Metatranscriptome	175	Y
F042171	Metagenome	158	Y
F042898	Metagenome	157	Y
F059635	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000144210	F059635	AGGAG	VNIRSCWADIQVWGLNKLHWIKLCLQDLTHNLKQDENPDLRIFVFVLVYILFSAVGAYNFAHLAAFLYIVWLLERQNGK
Ga0214919_1000144214	F042898	GGA	MTKPIMSKSKLTIRVQDQEKINNIANWCKANLEPTEWDLTPMHLFRPDYKFHFECDKTRMQVILQHL
Ga0214919_1000144234	F025611	AGG	MRIALCFSGQNRTGHVTADNIKRYVGDLLPDCDVFAHFWDSETRGTGYANREGAVSTNAEWHSPQTTNPEKNVEFYRQWSPRTIMIEEYGLQPNRPKWGGRRWDPVEQKWHVSMWRSLYEANKLKQDYAQKNQITYDYTVRLRSDLVFDSSKSLEQDIKLLDGMTNSMLFGDHYAIWPIHGMTRIEDIFWIGPNRLMDQVATYYATYTNTVPNIDEPQQPGYQDWQWHSANWITRQLGWEFYPLQNNIMRIYTEQDIELGIDPLDPGFGPAPRYGAFHNKNV
Ga0214919_1000144243	F042171	N/A	LEDEVKYVPHEVVRAIRELARNASSPYSDGFSACAYKHDLYVLKCFIEDMYKSCPDFPQQEAEWEQVRLMEILKRK
Ga0214919_100014426	F034180	AGGAG	VNIKKLSLAVAGALLVVGCAGNNGIVKNADLKPDTDSIRPKPVSTVFHRPEGAMTITFSNDGKFLEITSKGTAPIAGNNAFSIEDAAQVAQLRAKKNIAEFISTQLNTTRSLKVLSTTVQKSLENTTNGMSEEVKVDDKDFDADGNPVITRAYDDGSRDKVSLPNEKDPNTNSQKIAQILRENITTSSTALLRGVMTVSEKIDQQGRTIVVEVKTGVTTVNAANELRKIMGSN