Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10001397 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 39633 |
Total Scaffold Genes | 53 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (75.47%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016388 | Metagenome / Metatranscriptome | 247 | N |
F041650 | Metagenome | 159 | N |
F046342 | Metagenome | 151 | Y |
F053147 | Metagenome | 141 | N |
F065780 | Metagenome / Metatranscriptome | 127 | Y |
F091071 | Metagenome | 108 | Y |
F091376 | Metagenome | 107 | Y |
F098948 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214919_1000139710 | F091376 | AGGAG | MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDSETVVGYVWSDCDLTGLDKWKFSTMTNTQAMTIAKGLNSECFFGDDGTIQAPQVAV |
Ga0214919_1000139712 | F065780 | AGGA | MKRILNYLAENTWTWVGTGMVLITLSGPTLRQALLLTGFGILLHSVISLTQKDPE |
Ga0214919_1000139713 | F016388 | N/A | MNSMIAKTLDLCQRLVSLFIASALPIITGGAILGVDIVKSAGVAGLTALFGVIQKLAAASVDGELSAEEIQAAFGSAKK |
Ga0214919_1000139721 | F046342 | GGAG | MTCPWALVAVHWVDAFDSSNGWIELDDYKPQVCNVVTIGFLYPDCLPGYITVTASYFPDEVPNLKTVGMLTHIPSGMVQKIRVLEQPNFDLTVQHVSPTM |
Ga0214919_1000139728 | F053147 | AGGCGG | MTASFYKLKDETWGVRIKDFAGEANMEVEVTTKAGDSKTVILGNRVAKFDDAELWSLAAKGTVNVSKVKVAQPVQPDEEPF |
Ga0214919_1000139749 | F091071 | N/A | MATFTPPTDELVVWANPFDRRIDHRLFRFLHPGARGRNVFKLTDNSYTENEPGDRSTVKVTYYGGHSHPVSAAEAALLTAAGYGSNLT |
Ga0214919_1000139751 | F098948 | AGG | MIHQETHPGLDVEGCWKCKIAHVRVSAEAMPTRKAESANIIAKEKVLHKDLDAYHRLRQDGQQPKHIDGAAIVEKRAEENWQVATGILPDKSNIV |
Ga0214919_100013979 | F041650 | AGGA | MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQAQAKELQK |
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