NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001397

Scaffold Ga0214919_10001397


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001397 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39633
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (75.47%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016388Metagenome / Metatranscriptome247N
F041650Metagenome159N
F046342Metagenome151Y
F053147Metagenome141N
F065780Metagenome / Metatranscriptome127Y
F091071Metagenome108Y
F091376Metagenome107Y
F098948Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000139710F091376AGGAGMKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDSETVVGYVWSDCDLTGLDKWKFSTMTNTQAMTIAKGLNSECFFGDDGTIQAPQVAV
Ga0214919_1000139712F065780AGGAMKRILNYLAENTWTWVGTGMVLITLSGPTLRQALLLTGFGILLHSVISLTQKDPE
Ga0214919_1000139713F016388N/AMNSMIAKTLDLCQRLVSLFIASALPIITGGAILGVDIVKSAGVAGLTALFGVIQKLAAASVDGELSAEEIQAAFGSAKK
Ga0214919_1000139721F046342GGAGMTCPWALVAVHWVDAFDSSNGWIELDDYKPQVCNVVTIGFLYPDCLPGYITVTASYFPDEVPNLKTVGMLTHIPSGMVQKIRVLEQPNFDLTVQHVSPTM
Ga0214919_1000139728F053147AGGCGGMTASFYKLKDETWGVRIKDFAGEANMEVEVTTKAGDSKTVILGNRVAKFDDAELWSLAAKGTVNVSKVKVAQPVQPDEEPF
Ga0214919_1000139749F091071N/AMATFTPPTDELVVWANPFDRRIDHRLFRFLHPGARGRNVFKLTDNSYTENEPGDRSTVKVTYYGGHSHPVSAAEAALLTAAGYGSNLT
Ga0214919_1000139751F098948AGGMIHQETHPGLDVEGCWKCKIAHVRVSAEAMPTRKAESANIIAKEKVLHKDLDAYHRLRQDGQQPKHIDGAAIVEKRAEENWQVATGILPDKSNIV
Ga0214919_100013979F041650AGGAMREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQAQAKELQK

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