Scaffold Ga0214919_10001397

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10001397
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39633
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (75.47%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F041650	Metagenome	159	N
F046342	Metagenome	151	Y
F053147	Metagenome	141	N
F065780	Metagenome / Metatranscriptome	127	Y
F091071	Metagenome	108	Y
F091376	Metagenome	107	Y
F098948	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000139710	F091376	AGGAG	MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDSETVVGYVWSDCDLTGLDKWKFSTMTNTQAMTIAKGLNSECFFGDDGTIQAPQVAV
Ga0214919_1000139712	F065780	AGGA	MKRILNYLAENTWTWVGTGMVLITLSGPTLRQALLLTGFGILLHSVISLTQKDPE
Ga0214919_1000139713	F016388	N/A	MNSMIAKTLDLCQRLVSLFIASALPIITGGAILGVDIVKSAGVAGLTALFGVIQKLAAASVDGELSAEEIQAAFGSAKK
Ga0214919_1000139721	F046342	GGAG	MTCPWALVAVHWVDAFDSSNGWIELDDYKPQVCNVVTIGFLYPDCLPGYITVTASYFPDEVPNLKTVGMLTHIPSGMVQKIRVLEQPNFDLTVQHVSPTM
Ga0214919_1000139728	F053147	AGGCGG	MTASFYKLKDETWGVRIKDFAGEANMEVEVTTKAGDSKTVILGNRVAKFDDAELWSLAAKGTVNVSKVKVAQPVQPDEEPF
Ga0214919_1000139749	F091071	N/A	MATFTPPTDELVVWANPFDRRIDHRLFRFLHPGARGRNVFKLTDNSYTENEPGDRSTVKVTYYGGHSHPVSAAEAALLTAAGYGSNLT
Ga0214919_1000139751	F098948	AGG	MIHQETHPGLDVEGCWKCKIAHVRVSAEAMPTRKAESANIIAKEKVLHKDLDAYHRLRQDGQQPKHIDGAAIVEKRAEENWQVATGILPDKSNIV
Ga0214919_100013979	F041650	AGGA	MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLQPMIQAQQAQAKELQK