Scaffold Ga0214919_10000988

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000988
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48084
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (61.54%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008677	Metagenome	329	Y
F029327	Metagenome	188	Y
F029985	Metagenome	186	Y
F033402	Metagenome / Metatranscriptome	177	Y
F056283	Metagenome / Metatranscriptome	137	Y
F082120	Metagenome / Metatranscriptome	113	Y
F086535	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000098811	F086535	GGA	MIQLKLWPPPNWSECVVRWDWLLEDNSPHINEIYSWCDQHGSPSRYHVHGWKSTEGFAFQFEDPKDAVLFSLTWTHR
Ga0214919_1000098819	F029985	GGA	MKKYRAIYRTVILVLLSILCGSAIVSSSPMYGGDRPSVARELPAKEREVQLNHGVAECVRTAWIGDVNRRTLICVEYRLKKEVK
Ga0214919_1000098824	F082120	N/A	VFIEFDLRQTHNYHYDLNLIKLDIAEWANRYGIPYTQKTIKYTHRLAFDDDRFYTVFATTWNSEFEYRLIDRKW
Ga0214919_1000098841	F029327	AGGA	MGSFKDIEIDIMEWQSMGRSINETYIYFKDYVTYEDVVRIFAREEIL
Ga0214919_1000098842	F033402	GGAG	MAEIRLDGLNKRQRVLADIMWSLEEWDDVERFVATLPNRERIECEGIVEMMRLELVESYRAGMKIEDTAEATQLIDKIRKL
Ga0214919_1000098846	F056283	AGGAG	MFETMVDQLVKVILTNEPVKTEFYNGTLFVRKIDENQARRVFHRLSKTLGLGSVYVTPIGNTGEYAFDFVAEKQQDEFSPFATVNS
Ga0214919_1000098853	F008677	AGG	MIVEKDRVYTFKLTNADELVGKIVDINDNAYIVAQPLSAVPTEKGIQLIFTVFTGNPKENATINKTAVAMICQTREEVCDHYLEATTGIKAVRKPSIIMG