Scaffold Ga0214919_10000650

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000650
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58912
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (15.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021773	Metagenome / Metatranscriptome	217	Y
F026554	Metagenome / Metatranscriptome	197	Y
F027850	Metagenome / Metatranscriptome	193	Y
F033807	Metagenome	176	Y
F041198	Metagenome / Metatranscriptome	160	Y
F044501	Metagenome / Metatranscriptome	154	Y
F101172	Metagenome / Metatranscriptome	102	N
F105157	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000065014	F026554	N/A	MKLDMNEVYHNYIVRVVIFALFTFKRQIRQPNVYKISVITFTIKRLPWKINLVIDTGLKLNKEDEREILLNELLEGIETDYLSTVVVTFVTPLKEVTMSIDLSDEEKYEHYLYS
Ga0214919_1000065017	F027850	N/A	MKGFKNYNKTELFNTIDKISIEKVGSQVVTKFDNRVINTSNVSNRYEIFDIVKYLKDKIELIEKNFTITKYNFRLTRGQQSLTLVSDSVEIGGVEFHKSFYILNSTDKSRRLSFNAGLKSDNFYTIGMNNVGMNKKHLTGVTQAAEDASVGLNGETFDEQIESLQSLVGHRIHFSKLRQIILGDKEEIPQINHRKFDAFKNTVRYASSDRKINLTAEQHKQLFQNSEAMKEVEHDFYLDAFWSFQMYLRLFNKQDAHIIKNETERIMKMTQWAVRNSVLEALGI
Ga0214919_1000065033	F101172	GGA	MSYLNEIKAYMRDINLDILMNCPDVKIDVSKRYYNKFRLFYPSRKLIKYTTEIGGVLVGSRAIRCFTIDGKPILERRVNDWDFVVTLDMAFKICADMGIEEIPQIGGVISIKNQRRWAHPSYQDAYRVGPVDVQLIVKEELPDYTEIEGVRIANFGYSVSQKIGLTTDLHNKLGGKTPNHRVSESIDEQYHKHISDMKEMIIKFNSLKWKQPA
Ga0214919_1000065036	F041198	AGAAG	MKVKCLNISKYNQYDRLPLTVGKVYDVIEVTHIPFNSRRYDDYTGPIYNLVNDKGEVSGYSDECVRLLTLDEVRELKINELINE
Ga0214919_1000065058	F044501	N/A	MRVIKSYNKFKESLVIDLMVMSVDILESMNIWHDVLLSAISAEEKDIFDTLKLPKDFYEGRLTLDFLSNNIEFVNSLSSLGLKKSPVQNTEEYQTFVNKPCKWMFIYDISSNELENPLYITFQVWNETNKEWEDVKFFKINGDVKKFYDKLSSKTIEVTDGDENYIYVTSDGNTWELQNLDKENDVYKRFFRKDELQSLLNDRKVTVSII
Ga0214919_1000065059	F021773	N/A	MKWLKGYKLFKEAKQEKVSYKNVINEICTAMVLLNNEFLDNLLDRGLKARYSENSEIFITDLKNLVLAKNRLNLGRFEGDNCVADDELAKVNMVFDSIEFDIEKDWDKLVSARTIARNIIDKLLLDSKLKPEMIKNIYWIGPNKDSEHQEDIVVEDKDGNQYSFYLNKNLATQKSASFNLFADDLIGADIDKLYKEEYLSKWDKLTQEWIRLIYENANKNIQQLIEKFIDAKRIDTIGYFEYYDIRHKDPKFKHLGEFIQEFDKNILKFSDLMNEIWKSKDNCFMDSERVTKEWMEIKIVILNSKILENLLTSSLKSNHTDDIQKSEDGWKLAGGTVKMKLFKTLVEKMGCLERPVYFLGKNGDIFNLVPSREFFREHYDDLKIKFDYHVNFEVSEEEENNDFTIKIKLELDDTTLIDMFIIVKFSGGEMSGKLSAKYKFDIADNFNYLISKKQSNQSE
Ga0214919_1000065072	F033807	N/A	MYCICCKKNNVIPNTPPVSSKISTEDSPPQHEEDILWKDSKRPDGSLVNVNNEMIDNGIIHIIDAGYGSTHDGDQFVIAICDDCIKENLADATLLYWGNYMYGGDYANDEIEKSKQKYRRRKNLDDIV
Ga0214919_1000065076	F105157	N/A	MRKIHKSKFDDKPHVLKTTLMYVHDNRICDGCDVSGVKCACLSLLGGGTSNLCQDCIEGILDSLDSTAVRDIKIDKILQ