Scaffold Ga0214919_10000479

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000479
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68272
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (82.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F014846	Metagenome / Metatranscriptome	259	Y
F020323	Metagenome	224	Y
F056421	Metagenome	137	Y
F057202	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000047912	F000346	AGGAG	MDKEDLKQDKKMIAGAVHKHEKKLHPGQPMTKFAKGGKTDMDMMKYGRGMAKVMNQKSGRGG
Ga0214919_1000047951	F056421	AGGAG	MKDDEVEDLFAYGWLDTAIAIVLALLAIAALFFFAGYLT
Ga0214919_1000047955	F057202	GGTGG	MNLTQQFKRMTRRLTPVEMAATELAEAELHKLEAHSAVEYATSVVSYEDARIKRLRKFLADAEKQT
Ga0214919_1000047957	F020323	N/A	MNRLTQLKAKLRAAQAELAIRTRTHNSASRAYQKVTAHITELEKKIVDLEKVSK
Ga0214919_1000047992	F014846	N/A	MIYLDVSGQSTYGIAICGRCSRKFLLAELAPDPNSPGLMVCKEDLDDYDPYRLAPRAPDQIVLPFTRPDTPINTHPAGLIQEAGDEFIITEDGDGYLEF