Scaffold Ga0214919_10000019

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10000019
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 244103
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (40.16%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F015306	Metagenome	255	Y
F016120	Metagenome / Metatranscriptome	249	Y
F016250	Metagenome / Metatranscriptome	248	Y
F017603	Metagenome / Metatranscriptome	239	Y
F062384	Metagenome / Metatranscriptome	130	Y
F079583	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_10000019113	F009453	N/A	MNMPSSSNPIMSAPSPPSGNGSRVIQSPNPNSTYPMASDPATATAHMIGKDYPTTADFANLMHAPSYSHGGSTYAGFQQPVMMQPPTLIESTRGNMYSDILSQVKQPLLVAIIVFLVSLPVLNVLIGHYIPSLIQMNGDVTTVGLALKSLVGGFLFWLIQKVLVPLMM
Ga0214919_10000019125	F015306	N/A	MIQYRMSRSIHSTEIHSDKPKVPRFRRLDNEHISAIESLFRAYPFLSGRVEIHMPYARAQPTFRSGTVWIWPKFDKRPVGYLIFMEGFAPCIWYPERQEGMTFRWLLPPTFCQSGPTVCLANILAGESVLQIEDIIVDEGKDLWSTQVFSKRWEALRALWNRLPPDQPLLAFEPQIVKPIMLHEWPLHYNSAIYWIIQPDHARQARWYWKDVVTAPTHRPLEFIPPVLKRSKEVISTLAARCIPYTKSCLPDTYSLSSHEGRSLGFAGISTLVLSLELRKKCAEQPAGVPVEVKWNDEFNKYQIVRILLDGSPITASSFFHHLE
Ga0214919_10000019149	F062384	N/A	MSLPVAMAPALAIMNPIDGVLHLFNSNPYFIGIMMLVLNLGGRFIGMEITKKQEEFLQHPWVRRLLIFTVLFVGTRSIQIAFWSTVVVVLILGYLFNENSALCLFGKGGAQGSTCSVKEEMTPEEKEILHRLQSKAQRFSSIRKESDTDDVLHTDIYAANMALLNRTMK
Ga0214919_10000019169	F016250	GAG	MSPFQILLCILVLLLAVAVSYAMFHSKGLINANPFMDKNLLKRGLDKPVIWLYYDTSDVNSRMWGDFGARSSRVLNLPFLNLCYQTIVHQNKDIYRVEVIGGLAGAAELLGGWDQLPPGLRDPISPVNEAEHDYLRAAILAKYGGLWLDPHSICLKPFGPLPKEKTVFFGTDLDETYAGEAGTTVPGLRALWTPKPDHPMFKEWSAVCYQRVAEKRGGQQIRGDAKWDFVRFSSDYVHTGLIVDPAAEGMRKKNGKRIELEDLLSNTDGNLPFDLCSYTTYIPLPGKELRDRTMFGWFLRMSEEQIMASDLAVKHLLKKSLNSHP
Ga0214919_10000019236	F017603	N/A	MSQTPSPYVGDYPFQHVEGNLFPPVCLKTHWDPTEMLRHILPQQSVQLPLAFRPWTKVCKQYVTSAPAESAPMPPKDMVFPTGGAFYPPGRYAASIDKESVLRTLNCPLDSSCPTSQYIPSPDSNMYVAGSTVPDRKPMSNSFVSELSFPQALLRVDTTTCRSANDNAYFQRSGRLFNNPTKQDRYGADKFYAHKDGLPQGQPMPHGGVHMPQPTASAVTGRHGSFPNPTGGAAQAQAMTQGKKEAYVKGTLRPTEFDTYILGTSTAGSAARVW
Ga0214919_1000001931	F016120	N/A	MSERKDLPSTHRQSIEEATAEAEARALEYDPAVRARFIRTMIQDIAQWMANGDSEDAIRAKGSEFVEHYPELFKKLIQRQDISPIQSMLAMLDRMSDGQLSQHQASVIIGKKLVDKYVTPQLNGSGGGTSGR
Ga0214919_100000197	F010014	AGTAG	MAQPVVPDERSIAARQSFPLPRFISRMRRETDATDTINARQFEHWQTNGPAMTNGRPDINRQAPFHDTMANSSRFSERNYRSQPRYDVDGERGVQNSFFDKYDTTSDSRNMARELRGSVYEDKNTGFQKESKKMLERNFDSRWLNPTVMRQQADAAEQLRPKMDDIRLFYQNKSVPKI
Ga0214919_1000001971	F079583	N/A	MTTVTSEFLYHLVVNNIAPIMASSVMGMYSSFFSGRNVSTPTLVRSDVDDERELDLLQMDRMLKWMSLVFEDSFVPVEKSGTTPGDSEPILDDTHKAYKKELYSIYVTICSDFRQYQHWKKYNSNIWVFSSYRNKNTKALARKILGDIKLFHEGLKMFSMFEKL
Ga0214919_1000001982	F007255	GGA	MPTWFPWMLVGGLVFIVLSFIGSKYKDKEYKNIQYAQDFISGSILIALTGVLVPDLFPQFELPASLGTFGPMGSDDIDIQVGPPRLAGK