NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10288081

Scaffold Ga0214923_10288081


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10288081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group II(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F035287Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_102880811F001981N/APLITIPKADICKAEIAQIAQQLTDRINEGEVNPVEAHIKLKAIVKACEVAIKQTEQTVADEASKHGKTFQAFGAEVTLKEGSLTPNYEEDEVYADLKSQMKAREELLKIAFRQAGKTAIFDESTGEQIPVCTAKGTKSSIAVSFK
Ga0214923_102880812F035287N/AMAVKTPPKKKKGIQKIGRVAGVQAAMMLLEKPYKATQLAEALGMHIRITYRIIDDLRATGHLYSHRCYYWFDPKKNNDLQHLIPLKDPFA

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