NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10174162

Scaffold Ga0214923_10174162


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10174162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1306
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F014844Metagenome / Metatranscriptome259Y
F032581Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_101741621F014844N/AMLIGYGYGYPTNMLQGGVAAGVWAAFNARATADGATAAEAAVDGCLFVRFAA
Ga0214923_101741622F001129N/AMPTPILQQMLGQGGTMQFIDATVSGTNFDFIVVNTAATFTTLTGTGGENLLTAYLLSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0214923_101741623F000847N/AMSWIKIKQALLTLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLALVVGVYFSDRVESIASMGSVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTTVNLTRFVESRDDRTAGWVATLSFQIPYGHSVCEIPT
Ga0214923_101741624F032581N/AMVRRTSEESTQMSMDEITRLTDKVKNDAEWYSERITRYLMENRTDYPLFNSPPSALDTIYPNGTNYNTGMALDARTLRRGAGLDRPWPYGYDPYCNNC
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