Scaffold Ga0214923_10110480

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10110480
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1825
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F039124	Metagenome / Metatranscriptome	164	N
F041754	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_101104802	F039124	GGA	LCGILCIVEMKTVSIIKDGEFMKSHIDYPVTNAQWKRIDNIVLWDYLMTLHLIDLDNSLVMFQGTLDIFYLRHRHNNDSVTKIDYNSDPWGRKFMINPSMYYCYVSCKIKIEVNIIITTVNNMRVYCVDVVKDV
Ga0214923_101104803	F041754	GGA	MNDIKLNAILEKYPKINEYWLLHNYNFGNSTSLGKRIGWVYNELMMNGRIDVIPNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVPLMILYSTSVNGLNINCLDVVKVNQI
Ga0214923_101104804	F015718	AGTAGG	MNDINEQYPVTNVMWKYMDNMSLGEYLASLGVDIKSYGFIKGYPRSFYLRIGFYQPGYVVVTNSHLYDNLVRVRDKDPWHRPFKVFPIGINVFGNEDYKYFALMATGLSNYGSCGHYNCYVHVTTVNGKSVYCVDVLN