NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10110480

Scaffold Ga0214923_10110480


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10110480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015718Metagenome / Metatranscriptome252Y
F039124Metagenome / Metatranscriptome164N
F041754Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_101104802F039124GGALCGILCIVEMKTVSIIKDGEFMKSHIDYPVTNAQWKRIDNIVLWDYLMTLHLIDLDNSLVMFQGTLDIFYLRHRHNNDSVTKIDYNSDPWGRKFMINPSMYYCYVSCKIKIEVNIIITTVNNMRVYCVDVVKDV
Ga0214923_101104803F041754GGAMNDIKLNAILEKYPKINEYWLLHNYNFGNSTSLGKRIGWVYNELMMNGRIDVIPNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVPLMILYSTSVNGLNINCLDVVKVNQI
Ga0214923_101104804F015718AGTAGGMNDINEQYPVTNVMWKYMDNMSLGEYLASLGVDIKSYGFIKGYPRSFYLRIGFYQPGYVVVTNSHLYDNLVRVRDKDPWHRPFKVFPIGINVFGNEDYKYFALMATGLSNYGSCGHYNCYVHVTTVNGKSVYCVDVLN

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