Scaffold Ga0214923_10104152

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10104152
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1903
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F030360	Metagenome / Metatranscriptome	185	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_101041522	F016528	N/A	MINNNELFAKVLTDNPLPYRCGDKVNTNRGIGYISGYNFKDREKTWKFTIRPYGLPNYYIDVETVYGKVE
Ga0214923_101041523	F014847	AGG	MEFENNEQILQDLMDQLHTLHKENARLLQKIEALEKHNEELNRKLKSIQALFL
Ga0214923_101041524	F028145	N/A	MKIFLVFFINLAVSLLTSILLYKLFKVDVSPTIISIGLIVVYMFLPQRFHDWIAEK
Ga0214923_101041525	F045700	GGA	MNIRPSQCFECETGIYKDVTINYFSELSDGRTCITKDVTIQRCDTCGAEIFDSKASQLVENNIRQQYPNYYEHSRSRRN
Ga0214923_101041527	F030360	N/A	MTEQIYMNLKDAVKRPELNSKTINRSNKAFVRMVDNYQKWNESMTADEPRETYEDDIFNCLFEYDLDGYSLAEYLKDKVYLVPDAELCEILNDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGLRKYENLYITGIRPDTYQVTISDEPKKYGGYIVGFENVTFID