Scaffold Ga0214923_10068662

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10068662
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2560
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F012449	Metagenome / Metatranscriptome	280	Y
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100686621	F005845	N/A	MLNPKPMKTTPTDFRRWQLHIRKECVNCIQPDHAETISHWRVNWTLLGLVLQAKKA
Ga0214923_100686622	F046337	N/A	MTWTRLTKYTMPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVTAWMYPNPPKP
Ga0214923_100686625	F012449	N/A	METLLTLLVSSLTALAIAEYHVLPQAWYKTWLARHKPFSCVTCLTFWVAALLTLLTCDWMLAPVYGIASAGLTVVILQMTNR
Ga0214923_100686626	F004837	N/A	MTQDEYLTAQKHRHYWEQYQAHLYMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADQFAEANQHTVTHALTNTPSE