Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10068662 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2560 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004837 | Metagenome / Metatranscriptome | 421 | Y |
F005845 | Metagenome / Metatranscriptome | 388 | Y |
F012449 | Metagenome / Metatranscriptome | 280 | Y |
F046337 | Metagenome / Metatranscriptome | 151 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214923_100686621 | F005845 | N/A | MLNPKPMKTTPTDFRRWQLHIRKECVNCIQPDHAETISHWRVNWTLLGLVLQAKKA |
Ga0214923_100686622 | F046337 | N/A | MTWTRLTKYTMPIPMEEVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVTAWMYPNPPKP |
Ga0214923_100686625 | F012449 | N/A | METLLTLLVSSLTALAIAEYHVLPQAWYKTWLARHKPFSCVTCLTFWVAALLTLLTCDWMLAPVYGIASAGLTVVILQMTNR |
Ga0214923_100686626 | F004837 | N/A | MTQDEYLTAQKHRHYWEQYQAHLYMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADQFAEANQHTVTHALTNTPSE |
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