NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10045396

Scaffold Ga0214923_10045396


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10045396 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002708Metagenome / Metatranscriptome535N
F014500Metagenome / Metatranscriptome262N
F074416Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100453961F074416N/AMGKAIINVSNDFFDVGGTEGDVMYSFTGNCGIKRDSVLYGKTINLSDMYDTMLDGVREFLFGGEFVSIIDKSKCKICISPIIRTYTTKKYGISIENVYSKIQGNLTGTTMTVDTLFNELKVKYGITGMDWMYLYNNVTKFYTDDVDILEYMVNRLLSNEIYEYFVTEYNLRTVGVVKKMRPCIRNNVSIDESCNLIKMQWNNGGSKDITLSNFVKSYNQWWMQKTGAKNKNRSDIKDYDLLLNGRSVTAVFPVYCPVFSNLRMNYTGIDFDGKNNLKKCSEIAGYNDKGETWSAASIDRI
Ga0214923_100453963F014500N/AMNNELSAESDLRNMITVDISETMIPEIELTDEELAAADDIRFSDEMAVTMAELPVFTDEQTNRYNDKMTMLAAIRADISVLNEAVTDETESYSVPAGRYDHVYSMGTI
Ga0214923_100453964F002708N/AMKKLQKEFTGNFDRVGNTKFIQLKKENGVAIYERQNMDGSFRSYEVFVVKVIEKGTALPGGNSVQETYEQYPGCAAFGKTAYDCKTIVSAEERFDELVKKVKCINDAKEESIKTGVPVKRGRKASVKMNVKMTLKKDSKFTINMLTTYTGVNIVYIRKAVNEWLESGVITISGVVKPESGRGKPSTEYTVA
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Institute for Fundamental Biomedical Research
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