Scaffold Ga0214923_10038259

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10038259
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3861
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_100382591	F096610	N/A	MAIRPKTYFVKMTDNTDGTFTISESKVLDKVNQHARHWRSFDKRKLTSKLRNSVLV
Ga0214923_1003825911	F032548	N/A	MKKKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK
Ga0214923_1003825912	F027756	GGAGG	MKLEDLVDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLPKNEKEAK
Ga0214923_100382599	F036564	GAG	MKMGRVCLDLNYIVDMDNEEMVKRAYECLYEDLMQGVKYGNIGNWIDVIEDKNAREDMIPEFLLEKENE