NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10038259

Scaffold Ga0214923_10038259


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10038259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3861
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100382591F096610N/AMAIRPKTYFVKMTDNTDGTFTISESKVLDKVNQHARHWRSFDKRKLTSKLRNSVLV
Ga0214923_1003825911F032548N/AMKKKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK
Ga0214923_1003825912F027756GGAGGMKLEDLVDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLPKNEKEAK
Ga0214923_100382599F036564GAGMKMGRVCLDLNYIVDMDNEEMVKRAYECLYEDLMQGVKYGNIGNWIDVIEDKNAREDMIPEFLLEKENE

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