NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214923_10036143

Scaffold Ga0214923_10036143


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10036143 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4011
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F005585Metagenome / Metatranscriptome395Y
F014016Metagenome / Metatranscriptome266N
F014613Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100361431F000545N/AMDENWVRWALGVSEMRTDAHPFICSSCKLVTPHIEVNRYETSDIPEAPEEVWLIECQRCFTQRIIYPSDRIASKEDDIVRCDQCGNWKMKAGNCRVCRLAAGFEKQMVQYWNGNATMERPYDDANL
Ga0214923_100361432F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADPNPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKPIQTTKPELASFIKEQRPNDPEPIVWDVSTIAAELGAEVIDEMPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGSDGHWVFQK
Ga0214923_100361433F005585GAGGVTGSTMLVTPYSTGALSMATRGTIFTAFTKSREFSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLTDAINNFAGREKLNVELPR
Ga0214923_100361434F014613N/AMQMLPNLSDEAVAAIIIGVPFLSLYLWGLWTSAKAKAFNEGYKRGRSSVRYTEVIK
Ga0214923_100361435F014016GGAMINKIALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.