Basic Information | |
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Taxon OID | 3300023179 Open in IMG/M |
Scaffold ID | Ga0214923_10012319 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8442 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (46.88%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Associated Families | 10 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F016774 | Metagenome / Metatranscriptome | 244 | Y |
F027756 | Metagenome / Metatranscriptome | 193 | N |
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032548 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F036564 | Metagenome / Metatranscriptome | 169 | N |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F049419 | Metagenome / Metatranscriptome | 146 | Y |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214923_1001231914 | F049419 | N/A | MNKKIDWFNLATTYIFFGIVYGTIVTLCWNYLFEPTFNIHLSILQGFGVHLICRILFGNTNTNYISNFYSQKAPDLDKIDSYLKEFQEQLDKESEEVEKQYQDLDKKD |
Ga0214923_1001231918 | F044916 | N/A | MGRKKVEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLRQFTRDCLEELYKDNPKLFTDHSKLKLIKK |
Ga0214923_1001231920 | F036564 | AGGAG | MKMGRVCLDLNYIVDMDNDEMVKHAVESLYEDLMQGVKYGNISNWIDVIEDKNATPDMIPEFLLEKENE |
Ga0214923_1001231921 | F032548 | N/A | MKNKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK |
Ga0214923_1001231922 | F027756 | GAG | MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCMKINADWHLVSNIRIIELFSEDEKPKLGFGLTKNEKQAK |
Ga0214923_1001231926 | F030670 | GAG | MKVIRYIKELEDEFGKPLDKWAVYEEKITANGSWAIHLKDAKIVKTFPSPYHARNWMENDGKRTY |
Ga0214923_1001231928 | F034827 | N/A | MKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHAIFMKIRVPNTTSVNILDLDDGKAYDFSNKKRNTINDPDEKQGNKVYKLNAKINIVVL |
Ga0214923_1001231929 | F048123 | GGAG | MKPRYDFNKGKLISYDGEIIEFAGSKMVDKYSDQVEEIMSLFDFKKGEYLVSDESTIGDFEKENINPKKLEKFKKKYGFSLTNRSNISKIAERMYNFRPF |
Ga0214923_100123194 | F062446 | N/A | MIFNPIKFIAFIFIVLAWILMTFFFVGCANSSYHTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQAVFLNIKY |
Ga0214923_100123199 | F016774 | GAGG | MPQKKPKIEFLTEHIASLNHWRDQLLILEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKPKNKV |
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