NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10012319

Scaffold Ga0214923_10012319


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10012319 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8442
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (46.88%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Associated Families10

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F048123Metagenome / Metatranscriptome148Y
F049419Metagenome / Metatranscriptome146Y
F062446Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001231914F049419N/AMNKKIDWFNLATTYIFFGIVYGTIVTLCWNYLFEPTFNIHLSILQGFGVHLICRILFGNTNTNYISNFYSQKAPDLDKIDSYLKEFQEQLDKESEEVEKQYQDLDKKD
Ga0214923_1001231918F044916N/AMGRKKVEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLRQFTRDCLEELYKDNPKLFTDHSKLKLIKK
Ga0214923_1001231920F036564AGGAGMKMGRVCLDLNYIVDMDNDEMVKHAVESLYEDLMQGVKYGNISNWIDVIEDKNATPDMIPEFLLEKENE
Ga0214923_1001231921F032548N/AMKNKQNKDMEKAIKLLAELVDQADEDCPHDCRTIHFTNILEEASEFVKEYRNSK
Ga0214923_1001231922F027756GAGMKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCMKINADWHLVSNIRIIELFSEDEKPKLGFGLTKNEKQAK
Ga0214923_1001231926F030670GAGMKVIRYIKELEDEFGKPLDKWAVYEEKITANGSWAIHLKDAKIVKTFPSPYHARNWMENDGKRTY
Ga0214923_1001231928F034827N/AMKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHAIFMKIRVPNTTSVNILDLDDGKAYDFSNKKRNTINDPDEKQGNKVYKLNAKINIVVL
Ga0214923_1001231929F048123GGAGMKPRYDFNKGKLISYDGEIIEFAGSKMVDKYSDQVEEIMSLFDFKKGEYLVSDESTIGDFEKENINPKKLEKFKKKYGFSLTNRSNISKIAERMYNFRPF
Ga0214923_100123194F062446N/AMIFNPIKFIAFIFIVLAWILMTFFFVGCANSSYHTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQAVFLNIKY
Ga0214923_100123199F016774GAGGMPQKKPKIEFLTEHIASLNHWRDQLLILEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKPKNKV

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