Scaffold Ga0214923_10012238

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10012238
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8484
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (35.48%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1001223818	F044916	N/A	MGRKKLEKSRIQKGLEKEEKTFALMAKKIVDAIQDEKFLREFTKDCLEELYKDNPKLFADHSKLKLKKK
Ga0214923_1001223819	F064403	GGAG	MTNPRSKILSDLKKAYLKEHSTTLVDRILGYLNNLTDFQLCQLYAEKYETNPKYMAEQFEFKF
Ga0214923_1001223820	F036564	AGGAG	MKMGRVCLDLNYIVDMENEEMVKHAVECLYEDLMQGVKYGNITNWIDVIEDKNATEDMIPEFLLEKEND
Ga0214923_1001223821	F032548	N/A	MKHNQEMEKAIRLLEELVNQADEDCPHDCRTMHFTNALEEASEFIKEYKNTK
Ga0214923_1001223822	F027756	N/A	MKLKDLIDRKILYLNFPINRYAIQEGKVTEISPAEKCIKINNDWYLISNIRIIELFSEKERPTLGFN
Ga0214923_1001223826	F030670	N/A	MKVIRYIKELEDEFGKPLDKWAVYEEIHKPNYPHANFIDAKIVKTFTSPYHARNWMENDGKRIN
Ga0214923_1001223827	F078229	N/A	MSNKYTYYIEQNKDKDGNYIQSFSVYKTPVIKTIKVKTFKKLKDADDFLAKYESN
Ga0214923_1001223828	F034827	N/A	MKYTIISQDTESLIEFDKLKEGEVFSFFDPESVQRGNHAIYMKIRVPNTTSVNILDLEDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0214923_1001223829	F048123	GGAG	MKPRYDFNKGKLISYDGEIIEFAETNIVDKYADQVQEIMSLFNLKKGEYILTDESTIGHFGKETINKILLQKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214923_100122384	F062446	AGG	MVFNPIKIIAFILIFVAWILMTFFFVGCANAHYQTIPNAMCEDSQNYSTKYNMMDSQDGSKNPNAQVNIFGVTY
Ga0214923_100122389	F016774	GGAGG	MPLKKNKIEFLTEHTASLNHWRDQLLALEKSYYSKDPEKERTIRNMLNKYLDDVLAYNKNIKEKPKNKV