Scaffold Ga0214923_10006896

Overview

Basic Information

• Taxon OID: 3300023179
• Scaffold ID: Ga0214923_10006896
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12557
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033041	Metagenome / Metatranscriptome	178	Y
F044502	Metagenome	154	Y
F059775	Metagenome / Metatranscriptome	133	Y
F095172	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214923_1000689613	F033041	N/A	MEKIKINPDFKFTFDSDVDLRRAELTGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERANEYDMVEIYQDTHMFDMYDYI
Ga0214923_1000689614	F044502	GGA	MNNRVGFRQPFSYIYDMMKEQDKFNGLSKGQVKQIIRRNMITRVSKSAKVYDRKKEKRNLEF
Ga0214923_100068966	F059775	GGA	MHNYQYRKYMMSDLSLLNEITQSYTNPITEETSFTYTQTVYIMGPICEQWVTGSSPMGMPIMSCSLWSTASAVDILWDQEPLPNFSSSEVWPFPGTELTTFGNAMPIYQKDYCERFYCPTGSGPIPPPL
Ga0214923_100068968	F095172	N/A	MDIIDQYLGLWGVDVAVKKLRPHAQFELTNTTFTKWNDPTGTQPPTWEEINQQIEKDKELCHTLHT